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kalign

Global and progressive multiple sequence alignment

/Main/Ubuntu/i386/science/

Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Wu-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment. In comparisons made by its authors, Kalign was about 10 times faster than ClustalW and, depending on the alignment size, up to 50 times faster than popular iterative methods. It has been published in Lassmann and Sonnhammer, BMC Bioinformatics 2005, 6:298.

Homepage: http://msa.cgb.ki.se

Info:

Homepage:	-
Package version:	2.03-1
Architecture:	i386
Distribution:	Ubuntu
Filename:	kalign_2.03-1_i386.deb

Browse inside kalign_2.03-1_i386.deb:

pkg://kalign_2.03-1_i386.deb:73210/  downloads

1.05 KB  2007-04-28control  view  330+ mirrors
316 B  2007-04-28md5sums  view  420+ mirrors
[DIR]usr/  1000+ twin directories

Download kalign_2.03-1_i386.deb:

2007-04-29  ftp://ftp.nectec.or.th/.b/5/archive.ubuntu.com/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-29  ftp://ftp.itb.ac.id/pub/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://64.50.236.52/.1/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://64.50.238.52/.1/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://sapi.vlsm.org/.3/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.mtu.ru/.4/ubuntu/archive/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.tu-chemnitz.de/.SAN0/pub/linux/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.funet.fi/.m/mirrors3/archive.ubuntu.com/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.free.fr/.mirrors6/ftp.ubuntu.com/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.cesnet.cz/.vol/archive.ubuntu.com/mirror/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.uni-kassel.de/Mirrors/archive.ubuntu.com/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://24.215.0.24/Ubuntu/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.ticklers.org/archive.ubuntu.org/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://206.167.141.10/data4/pub/distro/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.tugraz.at/ftp.tu-graz.ac.at/.mirror-sites/mirror.inode.at/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.ula.ve/linux/distribuciones/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.iitm.ac.in/linux/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.mn-linux.org/linux/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.uni-klu.ac.at/linux/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.ussg.iu.edu/linux/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://mir1.ovh.net/lv0/ftp.ubuntu.com/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.hosteurope.de/mirror/archive.ubuntu.com/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.ecc.u-tokyo.ac.jp/mirror/archive.ubuntu.com/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.gnome.org/mirror/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.udc.es/mirror/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.int-evry.fr/mirror4/ubuntu.com/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.esat.net/mirrors/.3/archive.ubuntu.com/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.cica.es/mirrors/Linux/ubuntu/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.crihan.fr/mirrors/archive.ubuntu.com/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://147.52.159.12/mirrors/linux/ubuntu/packages/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.uwa.edu.au/mirrors/linux/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.cvut.cz/mirrors/ubuntu.com/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.filearena.net/mnt2/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.ccs.neu.edu/net/mirrors/archive.ubuntu.com/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.inf.tu-dresden.de/os/linux/dists/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.li.kernel.org/pub/.3/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://128.118.2.96/pub/.mirrors/1/ftp.ubuntu.com/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.twaren.net/pub/Linux/Ubuntu/ubuntu-security/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.twaren.net/pub/Linux/Ubuntu/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.tudelft.nl/pub/Linux/archive.ubuntu.com/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.man.szczecin.pl/pub/Linux/ubuntu-security/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.de.netclusive.de/pub/Linux/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://mirrors.hpcf.upr.edu/pub/Mirrors/ubuntu/archive/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.informatik.rwth-aachen.de/pub/comp/Linux/ubuntu/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.in2p3.fr/pub/linux/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.kfki.hu/pub/linux/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.uni-kl.de/pub/linux/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.dei.uc.pt/pub/linux/ubuntu/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.fh-giessen.de/pub/linux/ubuntu/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb
2007-04-28  ftp://ftp.rz.tu-bs.de/pub/mirror/.mounts/sdc1/archive.ubuntu.com/ubuntu/pool/universe/k/kalign/kalign_2.03-1_i386.deb