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amap-align

Protein multiple alignment by sequence annealing

/Main/Ubuntu/i386/science/

AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation.

Homepage: http://bio.math.berkeley.edu/amap/

Info:

Homepage:	-
Package version:	2.0-1
Architecture:	i386
Distribution:	Ubuntu
Filename:	amap-align_2.0-1_i386.deb

Browse inside amap-align_2.0-1_i386.deb:

pkg://amap-align_2.0-1_i386.deb:98252/  info  downloads

[DIR]usr/  65535+ twin directories
484 B  2005-07-12md5sums  view  252+ mirrors
813 B  2005-07-12control  view  584+ mirrors

Download amap-align_2.0-1_i386.deb:

2005-09-28  ftp://ftp.wh8.tu-dresden.de/pub/linux/distributions/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2005-09-28  ftp://ftp.rd.cri74.org/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2005-09-28  ftp://sapi.vlsm.org/.3/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2005-09-28  ftp://ftp.phys.ttu.edu/pub/ubuntu-mirror/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2005-09-28  ftp://ftp.cn.kernel.org/ubuntu/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2005-09-28  ftp://200.17.202.16/ubuntu-all/archive/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2005-09-28  ftp://ftp.tuke.sk/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://83.166.201.99/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://cudlug.cudenver.edu/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://200.17.202.17/ubuntu-all/archive/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://ftp.gnome.org/mirror/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://ftp.informatik.rwth-aachen.de/pub/comp/Linux/ubuntu/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://ftp.itb.ac.id/pub/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://204.152.191.7/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://ftp.via.ecp.fr/pub/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://192.87.102.42/vol/2/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://192.87.102.43/vol/2/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://ftp.twaren.net/pub/Linux/Ubuntu/ubuntu-security/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://ftp.twaren.net/pub/Linux/Ubuntu/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://64.15.75.221/ubuntu/archive/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://ftp.task.gda.pl/vol/zfs/ftp.ubuntu.com/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://ftp.li.kernel.org/pub/.6/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://wt t0_Series004_z005_ch01.tif/.sdb1/ubuntu.com/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://ftp.sh.cvut.cz/storage/1/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://209.172.63.197/pub/mirrors/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://ftp.muug.mb.ca/mirror/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://133.24.255.161/mirror4/ubuntu/archives/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://ftp.guadalinex.org/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb
2006-09-27  ftp://192.87.102.42/vol/3/ubuntu/pool/universe/a/amap-align/amap-align_2.0-1_i386.deb