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fastdnaml

Faster DNAML, makes phylogenetic trees using maximum likelihood

/Main/FreeBSD/7-current/ia64/

fastDNAml is a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences.

WWW: http://geta.life.uiuc.edu/~gary/programs/fastDNAml.html

fastDNAml is an attempt to solve the same problem as Joseph Felsenstein's DNAML, but to do so faster and using less memory, so that larger trees and/or more bootstrap replicates become tractable. Much of fastDNAml is merely a recoding of the PHYLIP 3.3 DNAML program from PASCAL to C.

For Felsenstein's phylogenetic analysis softwares, including the latest versions of DNAML, visit the PHYLIP Home Page: http://evolution.genetics.washington.edu/phylip.html

When publishing work that based on results from fastDNAml please cite:

Felsenstein, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17: 368-376.

Olsen, G. J., Matsuda, H., Hagstrom, R., and Overbeek, R. 1994. fastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. 10: 41-48.

Info:

Homepage:	-
Package version:	-
Architecture:	ia64
Distribution:	FreeBSD 7-current
Filename:	fastdnaml-1.2.2_1.tbz

Browse inside fastdnaml-1.2.2_1.tbz:

pkg://fastdnaml-1.2.2_1.tbz:60255/  downloads

[DIR]share/  65535+ twin directories
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17.09 KB  2007-12-07+MTREE_DIRS  view  65535+ mirrors
1.01 KB  2007-12-07+DESC  view  144 mirrors
2.90 KB  2007-12-07+CONTENTS  view  109 mirrors
64 B  2007-12-07+COMMENT  view  6053+ mirrors

Download fastdnaml-1.2.2_1.tbz:

2006-02-25  ftp://ftp.uni-hannover.de/pub/mirror/bsd/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2006-02-25  ftp://ftp.free.fr/.mirrors1/ftp.freebsd.org/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2006-02-25  ftp://ftp.cse.buffalo.edu/mirror/BSD/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2006-02-25  ftp://ftp13.freebsd.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2006-02-25  ftp://ftp5.uk.freebsd.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2006-02-25  ftp://ftp2.tw.freebsd.org/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2006-02-25  ftp://ftp.nz.freebsd.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2006-02-25  ftp://ftp.int.ru/.1/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2006-02-25  ftp://ftp.kr.freebsd.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2006-02-25  ftp://ftp.demon.nl/disk2/freebsd/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2006-02-25  ftp://ftp2.sk.freebsd.org/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2006-02-25  ftp://ftp.lug.udel.edu/pub/freebsd/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2006-02-25  ftp://ftp.cronyx.ru/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.estpak.ee/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.esat.net/mirrors/.1/ftp.freebsd.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.gwdg.de/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.gazi.edu.tr/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.mtu.ru/.3/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.tw.freebsd.org/pub/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://128.118.2.96/pub/.mirrors/1/ftp.freebsd.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.tu-chemnitz.de/.SAN0/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.duth.gr/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.itb.ac.id/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp5.freebsd.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.at.freebsd.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.de.freebsd.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.ussg.iu.edu/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.in2p3.fr/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp6.tw.freebsd.org/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.ics.es.osaka-u.ac.jp/mirrors/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://194.67.80.52/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.aist-nara.ac.jp/0/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://192.87.102.42/vol/3/freebsd-core/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://192.87.102.43/vol/3/freebsd-core/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.twaren.net/pub/BSD/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://213.24.208.27/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.freebsdchina.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://Packages.bz2/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.udc.es/mirror/freebsd/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://na.mirror.garr.it/pub/0/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://194.186.254.27/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp2.nl.freebsd.org/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.au.freebsd.org/disks/la2/.p/freebsd/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.sk.freebsd.org/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.nrc.ca/pub/systems/bsd/freebsd/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.jpix.ad.jp/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp12.freebsd.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-23  ftp://ftp.rmt.ru/.1/ftp.freebsd.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.luth.se/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz
2007-02-24  ftp://ftp.za.freebsd.org/pub/FreeBSD/ports/ia64/packages-7-current/All/fastdnaml-1.2.2_1.tbz