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recombine

A program to fit population models across sites

/Main/FreeBSD/6.3-release/i386/

Recombine fits a model which has a single population of constant size with a single recombination rate across all sites. It can accomodate either plain DNA or RNA data or SNP (single nucleotide polymorphism) data.

Recombine forms part of the Lamarc (Likelihood Analysis with Metropolis Algorithm using Random Coalescence) suite. See:

http://evolution.genetics.washington.edu/lamarc.html

WWW: http://evolution.genetics.washington.edu/lamarc/recombine.html

-- Johann Visagie <wjv@FreeBSD.org>

Info:

Homepage:	-
Package version:	-
Architecture:	i386
Distribution:	FreeBSD 6.3-release
Filename:	recombine-1.41.tbz

Browse inside recombine-1.41.tbz:

pkg://recombine-1.41.tbz:93406/  downloads

[DIR]share/  65535+ twin directories
[DIR]bin/  65535+ twin directories
17.09 KB  2007-12-21+MTREE_DIRS  view  65535+ mirrors
502 B  2007-12-21+DESC  view  411+ mirrors
545 B  2007-12-21+CONTENTS  view  337+ mirrors
48 B  2007-12-21+COMMENT  view  8310+ mirrors

Download recombine-1.41.tbz:

2006-12-01  ftp://ftp.internat.freebsd.org/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-11-30  ftp://ftp.fagskolen.gjovik.no/pub/FreeBSD/releases/i386/6.3-RELEASE/packages/All/recombine-1.41.tbz
2006-12-01  ftp://ftp.uni-hannover.de/pub/mirror/bsd/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://ftp.swin.edu.au/freebsd/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://ftp.mgts.by/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://ftp.free.fr/.mirrors1/ftp.freebsd.org/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://ftp.cse.buffalo.edu/mirror/BSD/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://ftp13.freebsd.org/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://ftp5.uk.freebsd.org/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://ftp2.tw.freebsd.org/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://193.219.61.67/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-12-02  ftp://ftp.euro.net/pub/mirrors/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://ftp.int.ru/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://ftp.kr.freebsd.org/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://ftp.sanet.sk/u1/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://ftp2.sk.freebsd.org/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-11-30  ftp://ftp.lug.udel.edu/pub/freebsd/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2006-12-01  ftp://ftp.cronyx.ru/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-29  ftp://ftp.es.freebsd.org/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.estpak.ee/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.esat.net/mirrors/.1/ftp.freebsd.org/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.lt.freebsd.org/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-29  ftp://ftp.man.szczecin.pl/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.gwdg.de/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.gazi.edu.tr/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.mtu.ru/.3/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.uvsq.fr/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.tw.freebsd.org/pub/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://128.118.2.96/pub/.mirrors/1/ftp.freebsd.org/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.tu-chemnitz.de/.SAN0/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.lucky.net/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-29  ftp://ftp.cerias.purdue.edu/pub/os/FreeBSD/releases/i386/6.3-RELEASE/packages/biology/recombine-1.41.tbz
2007-11-29  ftp://ftp.cerias.purdue.edu/pub/os/FreeBSD/releases/i386/6.3-RELEASE/packages/All/recombine-1.41.tbz
2007-11-29  ftp://ftp.cerias.purdue.edu/pub/os/FreeBSD/ports/i386/packages-6.3-release/biology/recombine-1.41.tbz
2007-11-30  ftp://ftp.informatik.rwth-aachen.de/pub/mirror/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.ural.ru/pub/mirrors/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.jpix.ad.jp/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.filearena.net/mnt5/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp5.jp.freebsd.org/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.de.freebsd.org/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.ussg.iu.edu/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.sfc.wide.ad.jp/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.in2p3.fr/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.cuhk.hk/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp6.tw.freebsd.org/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://ftp.nsu.ru/mirrors/ftp.freebsd.org/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-29  ftp://ftp.aha.ru/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2008-11-30  ftp://ftp.ics.es.osaka-u.ac.jp/mirrors/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2007-11-30  ftp://194.67.80.52/pub/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz
2008-11-30  ftp://ftp.aist-nara.ac.jp/0/FreeBSD/ports/i386/packages-6.3-release/All/recombine-1.41.tbz