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amap-align

Protein multiple alignment by sequence annealing

/Main/Debian/s390/science/

AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation.

The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.

Info:

Homepage:	-
Package version:	2.2-1
Architecture:	s390
Distribution:	Debian
Filename:	amap-align_2.2-1_s390.deb

Browse inside amap-align_2.2-1_s390.deb:

pkg://amap-align_2.2-1_s390.deb:128082/  info  downloads

[DIR]usr/  65535+ twin directories
693 B  2007-04-11md5sums  view  189 mirrors
916 B  2007-04-11control  view  430+ mirrors

Download amap-align_2.2-1_s390.deb:

2007-04-26  ftp://ftp.linux.it/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://debian.lcs.mit.edu/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.kfki.hu/pub/linux/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.skynet.be/mirror1/debian.org/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.nz.debian.org/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.uni-hannover.de/pub/mirror/linux/debian-mirror/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.port80.se/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.kulnet.kuleuven.ac.be/mirror/ftp.debian.org/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://24.215.0.24/Debian/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.rfc822.org/pub/mirror/ftp.debian.org/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.fr.debian.org/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.cl.debian.org/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://64.15.134.18/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.free.fr/.mirrors1/ftp.debian.org/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.ankara.edu.tr/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.fi.debian.org/pub/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://161.53.160.16/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.carnet.hr/misc/.ftp.hr.debian.org/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://193.219.61.67/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.med.univ-tours.fr/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.sac.sk/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://64.50.238.52/.1/debian/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.crihan.fr/mirrors/ftp.debian.org/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://64.50.236.52/.1/debian/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.tiscali.nl/pub/mirror/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.demon.nl/disk3/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://147.52.159.12/mirrors/linux/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.wsisiz.edu.pl/pub/Linux/Debian/ftp.debian.org/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://77.88.19.68/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://200.17.202.1/debian-dists/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp2.sk.freebsd.org/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://200.17.202.16/debian-dists/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.tuke.sk/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2007-04-26  ftp://ftp.udc.es/mirror/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://217.75.96.164/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://mir1.ovh.net/lv0/ftp.debian.org/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://ftp.nfsi.pt/pub/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://ftp.tudelft.nl/pub/Linux/ftp.debian.org/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://ftp.bononia.it/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://ftp.li.kernel.org/pub/.3/ftp.debian.org/pub/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://cudlug.cudenver.edu/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://ftp.cz.debian.org/pub/mirror/ftp.debian.org/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://ftp.eq.uc.pt/pub/software/unix/Linux/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://ftp.uevora.pt/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://204.152.191.39/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://ftp.ecc.u-tokyo.ac.jp/mirror/ftp1.debian.or.jp/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://ftp.estpak.ee/pub/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://zoffy.asahi-net.or.jp/pub/linux/debian/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://ftp.at.debian.org/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb
2008-04-24  ftp://212.87.224.145/debian/pool/main/a/amap-align/amap-align_2.2-1_s390.deb