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dialign-tx

Segment-based multiple sequence alignment

/Main/Debian/powerpc/science/

DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities.

DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern: Improvement of the segment-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies, Algorithms for Molecular Biology 3:6, 2008

Info:

Homepage:	-
Package version:	1.0.1-2
Architecture:	powerpc
Distribution:	Debian
Filename:	dialign-tx_1.0.1-2_powerpc.deb

Browse inside dialign-tx_1.0.1-2_powerpc.deb:

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Download dialign-tx_1.0.1-2_powerpc.deb:

2007-06-23  ftp://ftp.linux.it/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.uni-frankfurt.de/pub/Mirrors3/debian.org/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://debian.lcs.mit.edu/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.kfki.hu/pub/linux/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.skynet.be/mirror1/debian.org/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.nz.debian.org/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.uni-stuttgart.de/pub/mirror/ftp.de.debian.org/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.uni-hannover.de/pub/mirror/linux/debian-mirror/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.port80.se/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.kulnet.kuleuven.ac.be/mirror/ftp.debian.org/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.uni-koeln.de/mirrors/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.uni-kassel.de/Mirrors1/ftp.de.debian.org/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://24.215.0.24/Debian/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.rfc822.org/pub/mirror/ftp.debian.org/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.fr.debian.org/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.cl.debian.org/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://64.15.134.18/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.free.fr/.mirrors1/ftp.debian.org/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp13.freebsd.org/pub/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.ankara.edu.tr/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.fi.debian.org/pub/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://161.53.160.16/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.carnet.hr/misc/.ftp.hr.debian.org/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://193.219.61.67/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.med.univ-tours.fr/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.sac.sk/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://64.50.238.52/.1/debian/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.crihan.fr/mirrors/ftp.debian.org/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://64.50.236.52/.1/debian/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.tiscali.nl/pub/mirror/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.demon.nl/disk3/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://147.52.159.12/mirrors/linux/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.wsisiz.edu.pl/pub/Linux/Debian/ftp.debian.org/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.fh-giessen.de/pub/linux/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://77.88.19.68/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://200.17.202.1/debian-dists/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp2.sk.freebsd.org/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.uni-augsburg.de/mirrors/debian/ftp.de.debian.org/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.lug.udel.edu/pub/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://200.17.202.16/debian-dists/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.tuke.sk/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2007-06-23  ftp://ftp.udc.es/mirror/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2008-06-21  ftp://217.75.96.164/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2008-06-21  ftp://mir1.ovh.net/lv0/ftp.debian.org/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2008-06-21  ftp://ftp.nfsi.pt/pub/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2008-06-21  ftp://ftp.tudelft.nl/pub/Linux/ftp.debian.org/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2008-06-21  ftp://ftp.bononia.it/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2008-06-21  ftp://ftp.li.kernel.org/pub/.3/ftp.debian.org/pub/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2008-06-21  ftp://ftp.uni-kl.de/pub/linux/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb
2008-06-21  ftp://ftp.ula.ve/linux/distribuciones/debian/pool/main/d/dialign-t/dialign-tx_1.0.1-2_powerpc.deb