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autodock

analysis of ligand binding to protein structure

/Main/Debian/ia64/science/

AutoDock is a prime representative of the programs addressing the simulation of the docking of fairly small chemical ligands to rather big protein receptors. Earlier versions had all flexibility in the ligands while the protein was kept rather ridgid. This latest version 4 also allows for a flexibility of selected sidechains of surface residues, i.e., takes the rotamers into account.

The AutoDock program performs the docking of the ligand to a set of grids describing the target protein. AutoGrid pre-calculates these grids.

Info:

Homepage:	-
Package version:	4.0.1-4
Architecture:	ia64
Distribution:	Debian
Filename:	autodock_4.0.1-4_ia64.deb

Browse inside autodock_4.0.1-4_ia64.deb:

pkg://autodock_4.0.1-4_ia64.deb:259624/  info  downloads

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599 B  2007-08-27md5sums  view  323+ mirrors
949 B  2007-08-27control  view  333+ mirrors

Download autodock_4.0.1-4_ia64.deb:

2007-09-03  ftp://ftp.uni-frankfurt.de/pub/Mirrors3/debian.org/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2007-09-03  ftp://64.15.134.18/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2007-09-03  ftp://161.53.160.16/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2007-09-03  ftp://ftp.carnet.hr/misc/.ftp.hr.debian.org/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2007-09-03  ftp://193.219.61.67/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2007-09-03  ftp://64.50.238.52/.1/debian/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2007-09-03  ftp://64.50.236.52/.1/debian/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2007-09-03  ftp://ftp.wsisiz.edu.pl/pub/Linux/Debian/ftp.debian.org/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2007-09-03  ftp://200.17.202.1/debian-dists/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2007-09-03  ftp://ftp.lug.udel.edu/pub/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2007-09-03  ftp://200.17.202.16/debian-dists/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2007-09-03  ftp://ftp.tuke.sk/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://sunsite.mff.cuni.cz/MIRRORS/ftp.debian.org/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://mir1.ovh.net/lv0/ftp.debian.org/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.nfsi.pt/pub/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.ula.ve/linux/distribuciones/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://cudlug.cudenver.edu/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.hk.debian.org/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.ecc.u-tokyo.ac.jp/mirror/ftp1.debian.or.jp/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://zoffy.asahi-net.or.jp/pub/linux/debian/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.uk.debian.org/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://200.17.202.17/debian-dists/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.funet.fi/.m/mirrors3/ftp.debian.org/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.gnome.org/cdimage/.debian-mirror/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://128.118.2.96/pub/.mirrors/1/ftp.debian.org/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://mask-student.wsisiz.edu.pl/pub/Linux/Debian/ftp.debian.org/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.gva.es/mirror/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.jp.xemacs.org/pub/linux/debian/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.nerim.net/mirrors/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.gmd.de/ftp.debian.org/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.ussg.iu.edu/linux/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://core.ring.gr.jp/pub/linux/debian/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://202.18.64.24/pub/linux/debian/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://204.152.191.7/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.aist-nara.ac.jp/0/Linux/debian/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://192.87.102.42/vol/4/linux-debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://192.87.102.43/vol/4/linux-debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://133.37.44.6/pub/linux/debian/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://206.167.141.10/data/pub/distro/debian/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.twaren.net/pub/Linux/Debian/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.uvigo.es/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp9.freebsd.org/pub/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://200.236.31.1/debian-dists/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://packages.ndir.dscr.i18n.2008.11.29-21.31.00.gz/debian-dists/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.polytechnic.edu.na/pub/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://130.239.18.173/cdimage/.debian-mirror/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://130.239.18.137/cdimage/.debian-mirror/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp.debian.org/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp2.nl.freebsd.org/debian-cdimage/.debian-mirror/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb
2008-09-01  ftp://ftp2.nl.freebsd.org/debian/pool/main/a/autodocksuite/autodock_4.0.1-4_ia64.deb